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JMLR
2010
169views more  JMLR 2010»
14 years 6 months ago
Focused Belief Propagation for Query-Specific Inference
With the increasing popularity of largescale probabilistic graphical models, even "lightweight" approximate inference methods are becoming infeasible. Fortunately, often...
Anton Chechetka, Carlos Guestrin
WABI
2009
Springer
129views Bioinformatics» more  WABI 2009»
15 years 6 months ago
biRNA: Fast RNA-RNA Binding Sites Prediction
We present biRNA, a novel algorithm for prediction of binding sites between two RNAs based on minimization of binding free energy. Similar to RNAup approach [30], we assume the bin...
Hamidreza Chitsaz, Rolf Backofen, Süleyman Ce...
CIBCB
2007
IEEE
15 years 6 months ago
Modeling protein-DNA binding time in Stochastic Discrete Event Simulation of Biological Processes
Abstract— This paper presents a parametric model to estimate the DNA-protein binding time using the DNA and protein structures and details of the binding site. To understand the ...
Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. ...
BMCBI
2007
128views more  BMCBI 2007»
14 years 12 months ago
A robust and efficient algorithm for the shape description of protein structures and its application in predicting ligand bindin
Background: An accurate description of protein shape derived from protein structure is necessary to establish an understanding of protein-ligand interactions, which in turn will l...
Lei Xie, Philip E. Bourne
CVPR
2009
IEEE
16 years 6 months ago
(De) Focusing on Global Light Transport for Active Scene Recovery
Most active scene recovery techniques assume that a scene point is illuminated only directly by the illumination source. Consequently, global illumination effects due to inter-refl...
Li Zhang, Mohit Gupta, Srinivasa G. Narasimhan, Yu...