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VMCAI
2010
Springer
15 years 9 months ago
Shape Analysis in the Absence of Pointers and Structure
Shape analyses (Chase et al. 1990, Sagiv et al. 2002) discover properties of dynamic and/or mutable structures. We ask, "Is there an equivalent to shape analysis for purely fu...
Matthew Might
BMCBI
2010
153views more  BMCBI 2010»
14 years 12 months ago
Analysis of substructural variation in families of enzymatic proteins with applications to protein function prediction
Background: Structural variations caused by a wide range of physico-chemical and biological sources directly influence the function of a protein. For enzymatic proteins, the struc...
Drew H. Bryant, Mark Moll, Brian Y. Chen, Viachesl...
RECOMB
2003
Springer
16 years 5 days ago
Phylogenetically and spatially conserved word pairs associated with gene expression changes in yeasts
Background: Transcriptional regulation in eukaryotes often involves multiple transcription factors binding to the same transcription control region, and to understand the regulato...
Derek Y. Chiang, Alan M. Moses, Manolis Kamvysseli...
BMCBI
2006
112views more  BMCBI 2006»
14 years 12 months ago
GENOMEMASKER package for designing unique genomic PCR primers
Background: The design of oligonucleotides and PCR primers for studying large genomes is complicated by the redundancy of sequences. The eukaryotic genomes are particularly diffic...
Reidar Andreson, Eric Reppo, Lauris Kaplinski, Mai...
BMCBI
2006
112views more  BMCBI 2006»
14 years 12 months ago
A correlated motif approach for finding short linear motifs from protein interaction networks
Background: An important class of interaction switches for biological circuits and disease pathways are short binding motifs. However, the biological experiments to find these bin...
Soon-Heng Tan, Hugo Willy, Wing-Kin Sung, See-Kion...