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2002
IEEE
14 years 11 months ago
Open Metadata Formats: Efficient XML-Based Communication for High Performance Computing
High-performance computing faces considerable change as the Internet and the Grid mature. Applications that once were tightly-coupled and monolithic are now decentralized, with co...
Patrick Widener, Greg Eisenhauer, Karsten Schwan, ...
CASES
2001
ACM
15 years 3 months ago
A compiler framework for mapping applications to a coarse-grained reconfigurable computer architecture
The rapid growth of silicon densities has made it feasible to deploy reconfigurable hardware as a highly parallel computing platform. However, in most cases, the application needs...
Girish Venkataramani, Walid A. Najjar, Fadi J. Kur...
APBC
2003
117views Bioinformatics» more  APBC 2003»
15 years 1 months ago
A New Program to Compute the Surface Properties of Biomolecules
The interactions of large molecules with surfaces and with each other are strongly dependent upon their surface, rather than their bulk properties. In addition, the local properti...
Dan V. Nicolau Jr., Florin Fulga, Dan V. Nicolau
TCBB
2008
113views more  TCBB 2008»
14 years 11 months ago
Efficient Algorithms for the Computational Design of Optimal Tiling Arrays
The representation of a genome by oligonucleotide probes is a prerequisite for the analysis of many of its basic properties, such as transcription factor binding sites, chromosomal...
Alexander Schliep, Roland Krause
BMCBI
2002
128views more  BMCBI 2002»
14 years 11 months ago
Correlating overrepresented upstream motifs to gene expression: a computational approach to regulatory element discovery in euka
Background: Gene regulation in eukaryotes is mainly effected through transcription factors binding to rather short recognition motifs generally located upstream of the coding regi...
Michele Caselle, Ferdinando Di Cunto, Paolo Prover...