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JCB
2008
159views more  JCB 2008»
14 years 12 months ago
BayesMD: Flexible Biological Modeling for Motif Discovery
We present BayesMD, a Bayesian Motif Discovery model with several new features. Three different types of biological a priori knowledge are built into the framework in a modular fa...
Man-Hung Eric Tang, Anders Krogh, Ole Winther
JFP
2008
72views more  JFP 2008»
14 years 12 months ago
Dynamic rebinding for marshalling and update, via redex-time and destruct-time reduction
Most programming languages adopt static binding, but for distributed programming an exclusive reliance on static binding is too restrictive: dynamic binding is required in various...
Peter Sewell, Gareth Stoyle, Michael Hicks, Gavin ...
BMCBI
2004
130views more  BMCBI 2004»
14 years 11 months ago
PATTERNFINDER: combined analysis of DNA regulatory sequences and double-helix stability
Background: Regulatory regions that function in DNA replication and gene transcription contain specific sequences that bind proteins as well as less-specific sequences in which th...
Yanlin Huang, David Kowalski
NAR
2011
186views Computer Vision» more  NAR 2011»
14 years 2 months ago
TcoF-DB: dragon database for human transcription co-factors and transcription factor interacting proteins
The initiation and regulation of transcription in eukaryotes is complex and involves a large number of transcription factors (TFs), which are known to bind to the regulatory regio...
Ulf Schaefer, Sebastian Schmeier, Vladimir B. Baji...
KDD
2003
ACM
190views Data Mining» more  KDD 2003»
16 years 9 days ago
Distance-enhanced association rules for gene expression
We introduce a novel data mining technique for the analysis of gene expression. Gene expression is the effective production of the protein that a gene encodes. We focus on the cha...
Aleksandar Icev, Carolina Ruiz, Elizabeth F. Ryder