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BMCBI
2011
14 years 3 months ago
A Novel And Well-Defined Benchmarking Method For Second Generation Read Mapping
Background: Second generation sequencing technologies yield DNA sequence data at ultra high-throughput. Common to most biological applications is a mapping of the reads to an almo...
Manuel Holtgrewe, Anne-Katrin Emde, David Weese, K...
ICLP
2011
Springer
14 years 3 months ago
Transaction Logic with Defaults and Argumentation Theories
Transaction Logic is an extension of classical logic that gracefully integrates both declarative and procedural knowledge and has proved itself as a powerful formalism for many ad...
Paul Fodor, Michael Kifer
POPL
2011
ACM
14 years 2 months ago
Making prophecies with decision predicates
We describe a new algorithm for proving temporal properties expressed in LTL of infinite-state programs. Our approach takes advantage of the fact that LTL properties can often be...
Byron Cook, Eric Koskinen
CASES
2011
ACM
13 years 11 months ago
Enabling parametric feasibility analysis in real-time calculus driven performance evaluation
This paper advocates a rigorously formal and compositional style for obtaining key performance and/or interface metrics of systems with real-time constraints. We propose a hierarc...
Alena Simalatsar, Yusi Ramadian, Kai Lampka, Simon...
CIKM
2011
Springer
13 years 11 months ago
Semantic data markets: a flexible environment for knowledge management
We present Nyaya, a system for the management of Semantic-Web data which couples a general-purpose and extensible storage mechanism with efficient ontology reasoning and querying ...
Roberto De Virgilio, Giorgio Orsi, Letizia Tanca, ...