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BMCBI
2004
208views more  BMCBI 2004»
15 years 1 months ago
Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structures
Background: Hidden Markov Models (HMMs) have proven very useful in computational biology for such applications as sequence pattern matching, gene-finding, and structure prediction...
Vadim Alexandrov, Mark Gerstein
BMCBI
2004
228views more  BMCBI 2004»
15 years 1 months ago
An XML standard for the dissemination of annotated 2D gel electrophoresis data complemented with mass spectrometry results
Background: Many proteomics initiatives require a seamless bioinformatics integration of a range of analytical steps between sample collection and systems modeling immediately ass...
Romesh Stanislaus, Liu Hong Jiang, Martha Swartz, ...
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COMGEO
2004
ACM
15 years 1 months ago
On simplifying dot maps
Dot maps--drawings of point sets--are a well known cartographic method to visualize density functions over an area. We study the problem of simplifying a given dot map: given a se...
Mark de Berg, Prosenjit Bose, Otfried Cheong, Pat ...
CORR
2002
Springer
131views Education» more  CORR 2002»
15 years 1 months ago
Ownership Confinement Ensures Representation Independence for Object-Oriented Programs
for data abstraction and justifies reasoning by simulation. Representation independence has been shown for a variety of languages and constructs but not for shared references to mu...
Anindya Banerjee, David A. Naumann
JSYML
2000
103views more  JSYML 2000»
15 years 1 months ago
A Model Complete Theory of Valued D-Fields
The notion of a D-ring, generalizing that of a differential or a difference ring, is introduced. Quantifier elimination and a version of the AxKochen-Ershov principle is proven for...
Thomas Scanlon