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BMCBI
2004
208views more  BMCBI 2004»
14 years 11 months ago
Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structures
Background: Hidden Markov Models (HMMs) have proven very useful in computational biology for such applications as sequence pattern matching, gene-finding, and structure prediction...
Vadim Alexandrov, Mark Gerstein
BMCBI
2004
228views more  BMCBI 2004»
14 years 11 months ago
An XML standard for the dissemination of annotated 2D gel electrophoresis data complemented with mass spectrometry results
Background: Many proteomics initiatives require a seamless bioinformatics integration of a range of analytical steps between sample collection and systems modeling immediately ass...
Romesh Stanislaus, Liu Hong Jiang, Martha Swartz, ...
COMGEO
2004
ACM
14 years 11 months ago
On simplifying dot maps
Dot maps--drawings of point sets--are a well known cartographic method to visualize density functions over an area. We study the problem of simplifying a given dot map: given a se...
Mark de Berg, Prosenjit Bose, Otfried Cheong, Pat ...
CORR
2002
Springer
131views Education» more  CORR 2002»
14 years 11 months ago
Ownership Confinement Ensures Representation Independence for Object-Oriented Programs
for data abstraction and justifies reasoning by simulation. Representation independence has been shown for a variety of languages and constructs but not for shared references to mu...
Anindya Banerjee, David A. Naumann
JSYML
2000
103views more  JSYML 2000»
14 years 11 months ago
A Model Complete Theory of Valued D-Fields
The notion of a D-ring, generalizing that of a differential or a difference ring, is introduced. Quantifier elimination and a version of the AxKochen-Ershov principle is proven for...
Thomas Scanlon