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» Formal multiple-bernoulli models for language modeling
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CMSB
2008
Springer
15 years 7 months ago
A Language for Biochemical Systems
Abstract. CBS is a Calculus of Biochemical Systems intended to allow the modelling of metabolic, signalling and regulatory networks in a natural and modular manner. In this paper w...
Michael Pedersen, Gordon D. Plotkin
BMCBI
2010
178views more  BMCBI 2010»
15 years 6 months ago
Applications of a formal approach to decipher discrete genetic networks
Background: A growing demand for tools to assist the building and analysis of biological networks exists in systems biology. We argue that the use of a formal approach is relevant...
Fabien Corblin, Eric Fanchon, Laurent Trilling
FM
2009
Springer
138views Formal Methods» more  FM 2009»
16 years 18 days ago
What Can Formal Methods Bring to Systems Biology?
This position paper argues that the operational modelling approaches from the formal methods community can be applied fruitfully within the systems biology domain. The results can ...
Nicola Bonzanni, K. Anton Feenstra, Wan Fokkink, E...
ICSE
2009
IEEE-ACM
16 years 6 months ago
Analyzing critical process models through behavior model synthesis
Process models capture tasks performed by agents together with their control flow. Building and analyzing such models is important but difficult in certain areas such as safety-cr...
Christophe Damas, Bernard Lambeau, Francois Roucou...
ECEASST
2008
77views more  ECEASST 2008»
15 years 6 months ago
Using OCL in Executable UML
Executable UML allows precisely describing the software system at level of abstraction. The executable models can be translated to a less programming language completely or execute...
Ke Jiang, Lei Zhang, Shigeru Miyake