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BMCBI
2010
123views more  BMCBI 2010»
14 years 12 months ago
Decoding HMMs using the k best paths: algorithms and applications
Background: Traditional algorithms for hidden Markov model decoding seek to maximize either the probability of a state path or the number of positions of a sequence assigned to th...
Daniel G. Brown 0001, Daniil Golod
BMCBI
2008
141views more  BMCBI 2008»
14 years 12 months ago
The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation
Background: Automated protein function prediction methods are needed to keep pace with high-throughput sequencing. With the existence of many programs and databases for inferring ...
Chenggang Yu, Nela Zavaljevski, Valmik Desai, Seth...
BMCBI
2008
129views more  BMCBI 2008»
14 years 12 months ago
An analytic and systematic framework for estimating metabolic flux ratios from 13C tracer experiments
Background: Metabolic fluxes provide invaluable insight on the integrated response of a cell to environmental stimuli or genetic modifications. Current computational methods for e...
Ari Rantanen, Juho Rousu, Paula Jouhten, Nicola Za...
CN
2008
140views more  CN 2008»
14 years 12 months ago
Congestion control in utility fair networks
This paper deals with a congestion control framework for elastic and real-time traffic, where the user's application is associated with a utility function. We allow users to ...
Tobias Harks, Tobias Poschwatta
SIAMCO
2008
130views more  SIAMCO 2008»
14 years 11 months ago
Important Moments in Systems and Control
The moment problem matured from its various special forms in the late 19th and early 20th Centuries to a general class of problems that continues to exert profound influence on the...
Christopher I. Byrnes, Anders Lindquist