We describe algorithms for pattern matching and pattern learning in TOPS diagrams (formal descriptions of protein topologies). These problems can be reduced to checking for subgrap...
act notation, so separating the abstract syntax and semantics of the language constructs from their different concrete notations. Although the foundation constituents of the MDE a...
Using the achievements of my research group over the last 30+ years, I provide evidence to support the following hypothesis: By complementing each other, cooperating reasoning pro...
GXL (Graph eXchange Language) is designed to be a standard exchange format for graph-based tools. GXL is defined as an XML sublanguage, which offers support for exchanging instanc...
Background: Software tools that model and simulate the dynamics of biological processes and systems are becoming increasingly important. Some of these tools offer sophisticated gr...