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» Framework for a Protein Ontology
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146
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EICS
2009
ACM
14 years 10 months ago
Ontology-based modularization of user interfaces
Modularization is almost the only feasible way of implementing large-scale applications. For user interfaces, interactions involving more than one module generate dependencies bet...
Heiko Paulheim
96
Voted
BMCBI
2010
137views more  BMCBI 2010»
15 years 23 days ago
Biana: a software framework for compiling biological interactions and analyzing networks
Background: The analysis and usage of biological data is hindered by the spread of information across multiple repositories and the difficulties posed by different nomenclature sy...
Javier Garcia-Garcia, Emre Guney, Ramon Aragues, J...
98
Voted
BMCBI
2005
100views more  BMCBI 2005»
15 years 17 days ago
Evolutionary models for insertions and deletions in a probabilistic modeling framework
Background: Probabilistic models for sequence comparison (such as hidden Markov models and pair hidden Markov models for proteins and mRNAs, or their context-free grammar counterp...
Elena Rivas
113
Voted
ICLP
2004
Springer
15 years 6 months ago
Protein Folding Simulation in CCP
A protein is identified by a finite sequence of aminoacids, each of them chosen from a set of 20 elements. The Protein Structure Prediction Problem is the problem of predicting t...
Alessandro Dal Palù, Agostino Dovier, Feder...
129
Voted
NIPS
2008
15 years 2 months ago
Predicting the Geometry of Metal Binding Sites from Protein Sequence
Metal binding is important for the structural and functional characterization of proteins. Previous prediction efforts have only focused on bonding state, i.e. deciding which prot...
Paolo Frasconi, Andrea Passerini