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» Framework for a Protein Ontology
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EKAW
2006
Springer
15 years 4 months ago
Role Organization Model in Hozo
The establishment of a computational framework of roles contributes effectively to the management of instance models because it provides us with a useful policy for treatment of vi...
Eiichi Sunagawa, Kouji Kozaki, Yoshinobu Kitamura,...
129
Voted
BMCBI
2005
155views more  BMCBI 2005»
15 years 14 days ago
Mining protein function from text using term-based support vector machines
Background: Text mining has spurred huge interest in the domain of biology. The goal of the BioCreAtIvE exercise was to evaluate the performance of current text mining systems. We...
Simon B. Rice, Goran Nenadic, Benjamin J. Stapley
96
Voted
MCS
2010
Springer
15 years 5 months ago
An Experimental Comparison of Hierarchical Bayes and True Path Rule Ensembles for Protein Function Prediction
Abstract. The computational genome-wide annotation of gene functions requires the prediction of hierarchically structured functional classes and can be formalized as a multiclass, ...
Matteo Re, Giorgio Valentini
140
Voted
BMCBI
2005
160views more  BMCBI 2005»
15 years 14 days ago
Data-poor categorization and passage retrieval for Gene Ontology Annotation in Swiss-Prot
Background: In the context of the BioCreative competition, where training data were very sparse, we investigated two complementary tasks: 1) given a Swiss-Prot triplet, containing...
Frédéric Ehrler, Antoine Geissbü...
KR
2010
Springer
15 years 5 months ago
Pushing the Limits of Reasoning over Ontologies with Hidden Content
There is currently a growing interest in techniques for hiding parts of the signature of an ontology Kh that is being reused by another ontology Kv. Towards this goal, Cuenca Grau...
Bernardo Cuenca Grau, Boris Motik