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BMCBI
2010
149views more  BMCBI 2010»
14 years 12 months ago
RuleMonkey: software for stochastic simulation of rule-based models
Background: The system-level dynamics of many molecular interactions, particularly protein-protein interactions, can be conveniently represented using reaction rules, which can be...
Joshua Colvin, Michael I. Monine, Ryan N. Gutenkun...
BMCBI
2008
204views more  BMCBI 2008»
14 years 12 months ago
EST2uni: an open, parallel tool for automated EST analysis and database creation, with a data mining web interface and microarra
Background: Expressed sequence tag (EST) collections are composed of a high number of single-pass, redundant, partial sequences, which need to be processed, clustered, and annotat...
Javier Forment, Francisco Gilabert Villamón...
ICSE
2009
IEEE-ACM
16 years 16 days ago
Do code clones matter?
Code cloning is not only assumed to inflate maintenance costs but also considered defect-prone as inconsistent changes to code duplicates can lead to unexpected behavior. Conseque...
Benjamin Hummel, Elmar Jürgens, Florian Deiss...
KBSE
2002
IEEE
15 years 4 months ago
Report on the Workshop on the State of the Art in Automated Software Engineering
ort gives their abstracts. s of the position papers Recent Experiences with Code Generation and Task Automation Agents in Software Tools (J. Grundy, J. Hosking) As software grows i...
Yves Ledru, David F. Redmiles
BMCBI
2010
163views more  BMCBI 2010»
14 years 12 months ago
DraGnET: Software for storing, managing and analyzing annotated draft genome sequence data
Background: New "next generation" DNA sequencing technologies offer individual researchers the ability to rapidly generate large amounts of genome sequence data at drama...
Stacy Duncan, Ruchita Sirkanungo, Leslie Miller, G...