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BMCBI
2011
14 years 1 months ago
ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data
Background: With next-generation sequencing technologies, experiments that were considered prohibitive only a few years ago are now possible. However, while these technologies hav...
Osvaldo Zagordi, Arnab Bhattacharya, Nicholas Erik...
BMCBI
2007
163views more  BMCBI 2007»
14 years 9 months ago
Strainer: software for analysis of population variation in community genomic datasets
Background: Metagenomic analyses of microbial communities that are comprehensive enough to provide multiple samples of most loci in the genomes of the dominant organism types will...
John M. Eppley, Gene W. Tyson, Wayne M. Getz, Jill...
CEC
2010
IEEE
14 years 7 months ago
Beating the 'world champion' evolutionary algorithm via REVAC tuning
Abstract-- We present a case study demonstrating that using the REVAC parameter tuning method we can greatly improve the `world champion' EA (the winner of the CEC2005 competi...
Selmar K. Smit, A. E. Eiben
JMLR
2010
143views more  JMLR 2010»
14 years 8 months ago
A Quasi-Newton Approach to Nonsmooth Convex Optimization Problems in Machine Learning
We extend the well-known BFGS quasi-Newton method and its memory-limited variant LBFGS to the optimization of nonsmooth convex objectives. This is done in a rigorous fashion by ge...
Jin Yu, S. V. N. Vishwanathan, Simon Günter, ...
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KBSE
2009
IEEE
15 years 4 months ago
Alattin: Mining Alternative Patterns for Detecting Neglected Conditions
—To improve software quality, static or dynamic verification tools accept programming rules as input and detect their violations in software as defects. As these programming rul...
Suresh Thummalapenta, Tao Xie