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AAAI
2008
15 years 2 months ago
Efficient Haplotype Inference with Answer Set Programming
Identifying maternal and paternal inheritance is essential to be able to find the set of genes responsible for a particular disease. Although we have access to genotype data (gene...
Esra Erdem, Ferhan Türe
AAAI
2007
15 years 2 months ago
Learning Graphical Model Structure Using L1-Regularization Paths
Sparsity-promoting L1-regularization has recently been succesfully used to learn the structure of undirected graphical models. In this paper, we apply this technique to learn the ...
Mark W. Schmidt, Alexandru Niculescu-Mizil, Kevin ...
ACSD
2007
IEEE
93views Hardware» more  ACSD 2007»
15 years 1 months ago
SAT-based Unbounded Model Checking of Timed Automata
We present an improvement of the SAT-based Unbounded Model Checking (UMC) algorithm. UMC, a symbolic approach introduced in [7], uses propositional formulas in conjunctive normal ...
Wojciech Penczek, Maciej Szreter
EVOW
2008
Springer
15 years 1 months ago
Reactive Stochastic Local Search Algorithms for the Genomic Median Problem
Abstract. The genomic median problem is an optimization problem inspired by a biological issue: it aims at finding the chromosome organization of the common ancestor to multiple li...
Renaud Lenne, Christine Solnon, Thomas Stützl...
AAAI
2004
15 years 1 months ago
PROBCONS: Probabilistic Consistency-Based Multiple Alignment of Amino Acid Sequences
Obtaining an accurate multiple alignment of protein sequences is a difficult computational problem for which many heuristic techniques sacrifice optimality to achieve reasonable r...
Chuong B. Do, Michael Brudno, Serafim Batzoglou