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131
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BMCBI
2010
175views more  BMCBI 2010»
15 years 3 months ago
Calibur: a tool for clustering large numbers of protein decoys
Background: Ab initio protein structure prediction methods generate numerous structural candidates, which are referred to as decoys. The decoy with the most number of neighbors of...
Shuai Cheng Li, Yen Kaow Ng
121
Voted
BMCBI
2008
155views more  BMCBI 2008»
15 years 3 months ago
AMMOS: Automated Molecular Mechanics Optimization tool for in silico Screening
Background: Virtual or in silico ligand screening combined with other computational methods is one of the most promising methods to search for new lead compounds, thereby greatly ...
Tania Pencheva, David Lagorce, Ilza Pajeva, Bruno ...
160
Voted
BMCBI
2007
144views more  BMCBI 2007»
15 years 3 months ago
Motif kernel generated by genetic programming improves remote homology and fold detection
Background: Protein remote homology detection is a central problem in computational biology. Most recent methods train support vector machines to discriminate between related and ...
Tony Håndstad, Arne J. H. Hestnes, Pål...
125
Voted
BMCBI
2007
128views more  BMCBI 2007»
15 years 3 months ago
Model order selection for bio-molecular data clustering
Background: Cluster analysis has been widely applied for investigating structure in bio-molecular data. A drawback of most clustering algorithms is that they cannot automatically ...
Alberto Bertoni, Giorgio Valentini
109
Voted
ICPR
2008
IEEE
16 years 4 months ago
A matrix alignment approach for link prediction
This paper introduces a new discriminative learning technique for link prediction based on the matrix alignment approach. Our algorithm automatically determines the most predictiv...
Jerry Scripps, Pang-Ning Tan, Feilong Chen, Abdol-...