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RECOMB
2005
Springer
16 years 4 months ago
Improved Pattern-Driven Algorithms for Motif Finding in DNA Sequences
Abstract. In order to guarantee that the optimal motif is found, traditional pattern-driven approaches perform an exhaustive search over all candidate motifs of length l. We develo...
Sing-Hoi Sze, Xiaoyan Zhao
RECOMB
2003
Springer
16 years 4 months ago
Joint classifier and feature optimization for cancer diagnosis using gene expression data
Recent research has demonstrated quite convincingly that accurate cancer diagnosis can be achieved by constructing classifiers that are designed to compare the gene expression pro...
Balaji Krishnapuram, Lawrence Carin, Alexander J. ...
RECOMB
2002
Springer
16 years 4 months ago
A new approach to analyzing gene expression time series data
We present algorithms for time-series gene expression analysis that permit the principled estimation of unobserved timepoints, clustering, and dataset alignment. Each expression p...
Ziv Bar-Joseph, Georg Gerber, David K. Gifford, To...
STOC
2007
ACM
136views Algorithms» more  STOC 2007»
16 years 4 months ago
Exponential separations for one-way quantum communication complexity, with applications to cryptography
We give an exponential separation between one-way quantum and classical communication protocols for two partial Boolean functions, both of which are variants of the Boolean Hidden...
Dmitry Gavinsky, Julia Kempe, Iordanis Kerenidis, ...
STOC
2005
ACM
164views Algorithms» more  STOC 2005»
16 years 4 months ago
Cooperative asynchronous update of shared memory
The Write-All problem for an asynchronous shared-memory system has the objective for the processes to update the contents of a set of shared registers, while minimizing the mber o...
Bogdan S. Chlebus, Dariusz R. Kowalski
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