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ENGL
2007
94views more  ENGL 2007»
15 years 1 months ago
Common subproofs in proof pairs
Abstract—In any formal theory, a proof is a sequence of well formed formulas (wff). Here, we consider the digraph whose nodes are proofs and the edges are pairs of proofs such t...
Guillermo Morales-Luna
BMCBI
2006
122views more  BMCBI 2006»
15 years 1 months ago
PET-Tool: a software suite for comprehensive processing and managing of Paired-End diTag (PET) sequence data
Background: We recently developed the Paired End diTag (PET) strategy for efficient characterization of mammalian transcriptomes and genomes. The paired end nature of short PET se...
Kuo Ping Chiu, Chee-Hong Wong, Qiongyu Chen, Prami...
BIBM
2009
IEEE
155views Bioinformatics» more  BIBM 2009»
15 years 8 months ago
Towards Reliable Isoform Quantification Using RNA-Seq Data
Background: In eukaryotes, alternative splicing often generates multiple splice variants from a single gene. Here weexplore the use of RNA sequencing (RNA-Seq) datasets to address...
Brian E. Howard, Steffen Heber
ISBRA
2009
Springer
15 years 8 months ago
Mean Square Residue Biclustering with Missing Data and Row Inversions
Cheng and Church proposed a greedy deletion-addition algorithm to find a given number of k biclusters, whose mean squared residues (MSRs) are below certain thresholds and the miss...
Stefan Gremalschi, Gulsah Altun, Irina Astrovskaya...
ISBRA
2009
Springer
15 years 8 months ago
Mining of cis-Regulatory Motifs Associated with Tissue-Specific Alternative Splicing
KIM, JIHYE. Mining of Cis-Regulatory Motifs Associated with Tissue-Specific Alternative Splicing. (Under the direction of Steffen Heber). Alternative splicing (AS) is an important...
Jihye Kim, Sihui Zhao, Brian E. Howard, Steffen He...