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BMCBI
2004
323views more  BMCBI 2004»
14 years 9 months ago
Biochemical Network Stochastic Simulator (BioNetS): software for stochastic modeling of biochemical networks
Background: Intrinsic fluctuations due to the stochastic nature of biochemical reactions can have large effects on the response of biochemical networks. This is particularly true ...
David Adalsteinsson, David McMillen, Timothy C. El...
BMCBI
2004
126views more  BMCBI 2004»
14 years 9 months ago
Visualization and analysis of microarray and gene ontology data with treemaps
Background: The increasing complexity of genomic data presents several challenges for biologists. Limited computer monitor views of data complexity and the dynamic nature of data ...
Eric H. Baehrecke, Niem Dang, Ketan Babaria, Ben S...
BMCBI
2004
91views more  BMCBI 2004»
14 years 9 months ago
SIGI: score-based identification of genomic islands
Background: Genomic islands can be observed in many microbial genomes. These stretches of DNA have a conspicuous composition with regard to sequence or encoded functions. Genomic ...
Rainer Merkl
COLING
2002
14 years 9 months ago
The LinGO Redwoods Treebank: Motivation and Preliminary Applications
The LinGO Redwoods initiative is a seed activity in the design and development of a new type of treebank. While several medium- to large-scale treebanks exist for English (and for...
Stephan Oepen, Kristina Toutanova, Stuart M. Shieb...
JSYML
2000
103views more  JSYML 2000»
14 years 9 months ago
A Model Complete Theory of Valued D-Fields
The notion of a D-ring, generalizing that of a differential or a difference ring, is introduced. Quantifier elimination and a version of the AxKochen-Ershov principle is proven for...
Thomas Scanlon