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» From Text to Pathway: Corpus Annotation for Knowledge Acquis...
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BMCBI
2006
130views more  BMCBI 2006»
13 years 6 months ago
Identifying biological concepts from a protein-related corpus with a probabilistic topic model
Background: Biomedical literature, e.g., MEDLINE, contains a wealth of knowledge regarding functions of proteins. Major recurring biological concepts within such text corpora repr...
Bin Zheng, David C. McLean Jr, Xinghua Lu
COLING
2008
13 years 7 months ago
Event Frame Extraction Based on a Gene Regulation Corpus
This paper describes the supervised acquisition of semantic event frames based pus of biomedical abstracts, in which the biological process of E. coli gene regulation has been lin...
Yutaka Sasaki, Paul Thompson, Philip Cotter, John ...
COLING
2010
13 years 1 months ago
Dependency-Driven Feature-based Learning for Extracting Protein-Protein Interactions from Biomedical Text
Recent kernel-based PPI extraction systems achieve promising performance because of their capability to capture structural syntactic information, but at the expense of computation...
Bing Liu, Longhua Qian, Hongling Wang, Guodong Zho...
BMCBI
2008
173views more  BMCBI 2008»
13 years 6 months ago
Extraction of semantic biomedical relations from text using conditional random fields
Background: The increasing amount of published literature in biomedicine represents an immense source of knowledge, which can only efficiently be accessed by a new generation of a...
Markus Bundschus, Mathäus Dejori, Martin Stet...
BMCBI
2008
147views more  BMCBI 2008»
13 years 6 months ago
Assessment of disease named entity recognition on a corpus of annotated sentences
Background: In recent years, the recognition of semantic types from the biomedical scientific literature has been focused on named entities like protein and gene names (PGNs) and ...
Antonio Jimeno-Yepes, Ernesto Jiménez-Ruiz,...