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» From polynomial time queries to graph structure theory
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RECOMB
2006
Springer
15 years 10 months ago
A Parameterized Algorithm for Protein Structure Alignment
This paper proposes a parameterized algorithm for aligning two protein structures, in the case where one protein structure is represented by a contact map graph and the other by a ...
Jinbo Xu, Feng Jiao, Bonnie Berger
164
Voted
SIGMOD
2009
ACM
171views Database» more  SIGMOD 2009»
15 years 10 months ago
GAMPS: compressing multi sensor data by grouping and amplitude scaling
We consider the problem of collectively approximating a set of sensor signals using the least amount of space so that any individual signal can be efficiently reconstructed within...
Sorabh Gandhi, Suman Nath, Subhash Suri, Jie Liu
COMPGEOM
2009
ACM
15 years 4 months ago
Minimum cuts and shortest homologous cycles
We describe the first algorithms to compute minimum cuts in surface-embedded graphs in near-linear time. Given an undirected graph embedded on an orientable surface of genus g, w...
Erin W. Chambers, Jeff Erickson, Amir Nayyeri
PODS
2008
ACM
129views Database» more  PODS 2008»
15 years 9 months ago
Tree-width and functional dependencies in databases
Conjunctive query (CQ) evaluation on relational databases is NP-complete in general. Several restrictions, like bounded tree-width and bounded hypertree-width, allow polynomial ti...
Isolde Adler
WG
2005
Springer
15 years 3 months ago
Hypertree Decompositions: Structure, Algorithms, and Applications
We review the concepts of hypertree decomposition and hypertree width from a graph theoretical perspective and report on a number of recent results related to these concepts. We al...
Georg Gottlob, Martin Grohe, Nysret Musliu, Marko ...