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RECOMB
2006
Springer
16 years 4 months ago
Efficient Enumeration of Phylogenetically Informative Substrings
We study the problem of enumerating substrings that are common amongst genomes that share evolutionary descent. For example, one might want to enumerate all identical (therefore co...
Stanislav Angelov, Boulos Harb, Sampath Kannan, Sa...
RECOMB
2006
Springer
16 years 4 months ago
A Parameterized Algorithm for Protein Structure Alignment
This paper proposes a parameterized algorithm for aligning two protein structures, in the case where one protein structure is represented by a contact map graph and the other by a ...
Jinbo Xu, Feng Jiao, Bonnie Berger
RECOMB
2005
Springer
16 years 4 months ago
Improved Pattern-Driven Algorithms for Motif Finding in DNA Sequences
Abstract. In order to guarantee that the optimal motif is found, traditional pattern-driven approaches perform an exhaustive search over all candidate motifs of length l. We develo...
Sing-Hoi Sze, Xiaoyan Zhao
POPL
2010
ACM
16 years 1 months ago
Dependent types and program equivalence
The definition of type equivalence is one of the most important design issues for any typed language. In dependentlytyped languages, because terms appear in types, this definition...
Jianzhou Zhao, Limin Jia, Stephanie Weirich, Vilhe...

Source Code
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15 years 12 months ago
The CImg Library
The CImg Library is an open source, C++ toolkit for image processing, designed with these properties in mind : Usefulness CImg defines classes and methods to manage images in y...
David Tschumperlé
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