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JPDC
2007
167views more  JPDC 2007»
14 years 9 months ago
On the design of high-performance algorithms for aligning multiple protein sequences on mesh-based multiprocessor architectures
In this paper, we address the problem of multiple sequence alignment (MSA) for handling very large number of proteins sequences on mesh-based multiprocessor architectures. As the ...
Diana H. P. Low, Bharadwaj Veeravalli, David A. Ba...
CASES
2006
ACM
15 years 3 months ago
Automatic performance model construction for the fast software exploration of new hardware designs
Developing an optimizing compiler for a newly proposed architecture is extremely difficult when there is only a simulator of the machine available. Designing such a compiler requ...
John Cavazos, Christophe Dubach, Felix V. Agakov, ...
TMC
2010
386views more  TMC 2010»
14 years 8 months ago
Design, Realization, and Evaluation of xShare for Impromptu Sharing of Mobile Phones
—Mobile phones are truly personal devices loaded with personal data such as photos, contacts, and call history. Yet it is often necessary or desirable to share our phones with ot...
Yunxin Liu, Ahmad Rahmati, Hyukjae Jang, Yuanhe Hu...
BMCBI
2004
151views more  BMCBI 2004»
14 years 9 months ago
Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics
Background: The general problem of RNA secondary structure prediction under the widely used thermodynamic model is known to be NP-complete when the structures considered include a...
Jens Reeder, Robert Giegerich
ISCA
2002
IEEE
95views Hardware» more  ISCA 2002»
15 years 2 months ago
Design Tradeoffs for the Alpha EV8 Conditional Branch Predictor
This paper presents the Alpha EV8 conditional branch predictor. The Alpha EV8 microprocessor project, canceled in June 2001 in a late phase of development, envisioned an aggressiv...
André Seznec, Stephen Felix, Venkata Krishn...