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BMCBI
2010
139views more  BMCBI 2010»
15 years 1 months ago
A global optimization algorithm for protein surface alignment
Background: A relevant problem in drug design is the comparison and recognition of protein binding sites. Binding sites recognition is generally based on geometry often combined w...
Paola Bertolazzi, Concettina Guerra, Giampaolo Liu...
GECCO
2009
Springer
161views Optimization» more  GECCO 2009»
15 years 5 months ago
Benchmarking the BFGS algorithm on the BBOB-2009 noisy testbed
The BFGS quasi-Newton method is benchmarked on the noisy BBOB-2009 testbed. A multistart strategy is applied with a maximum number of function evaluations of about 104 times the s...
Raymond Ros
JCC
2008
131views more  JCC 2008»
15 years 1 months ago
An optimized initialization algorithm to ensure accuracy in quantum Monte Carlo calculations
: Quantum Monte Carlo (QMC) calculations require the generation of random electronic configurations with respect to a desired probability density, usually the square of the magnitu...
Daniel R. Fisher, David R. Kent IV, Michael T. Fel...
AUTOMATICA
2005
86views more  AUTOMATICA 2005»
15 years 1 months ago
Sensitivity shaping with degree constraint by nonlinear least-squares optimization
This paper presents a new approach to shaping of the frequency response of the sensitivity function. In this approach, a desired frequency response is assumed to be specified at a...
Ryozo Nagamune, Anders Blomqvist
CEC
2008
IEEE
15 years 7 months ago
Solving large scale global optimization using improved Particle Swarm Optimizer
—As more and more real-world optimization problems become increasingly complex, algorithms with more capable optimizations are also increasing in demand. For solving large scale ...
Sheng-Ta Hsieh, Tsung-Ying Sun, Chan-Cheng Liu, Sh...