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ACRI
2008
Springer
15 years 10 months ago
On the Representation of Gliders in Rule 54 by De Bruijn and Cycle Diagrams
Abstract. Rule 54, in Wolfram’s notation, is one of elementary yet complexly behaving one-dimensional cellular automata. The automaton supports gliders, glider guns and other non...
Genaro Juárez Martínez, Andrew Adama...
ISMB
1997
15 years 5 months ago
Standardized Representations of the Literature: Combining Diverse Sources of Ribosomal Data
We are building a knowledge base (KB) of published structural data on the 30s ribosomal subunit in prokaryotes. Our KB is distinguished by a standardized representation of biologi...
Russ B. Altman, Neil F. Abernethy, Richard O. Chen
ALMOB
2007
155views more  ALMOB 2007»
15 years 4 months ago
Finding coevolving amino acid residues using row and column weighting of mutual information and multi-dimensional amino acid rep
Background: Some amino acid residues functionally interact with each other. This interaction will result in an evolutionary co-variation between these residues – coevolution. Ou...
Rodrigo Gouveia-Oliveira, Anders Gorm Pedersen
BMCBI
2004
265views more  BMCBI 2004»
15 years 3 months ago
ASAView: Database and tool for solvent accessibility representation in proteins
Background: Accessible surface area (ASA) or solvent accessibility of amino acids in a protein has important implications. Knowledge of surface residues helps in locating potentia...
Shandar Ahmad, M. Michael Gromiha, Hamed Fawareh, ...
CORR
2010
Springer
103views Education» more  CORR 2010»
15 years 2 months ago
BioBlender: a Software for Intuitive Representation of Surface Properties of Biomolecules
In this and the associated article BioBlender: A Software for Intuitive Representation of Surface Properties of Biomolecules [1], we present BioBlender as a complete instrument fo...
Raluca Mihaela Andrei, Marco Callieri, Maria Franc...