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BMCBI
2011
15 years 1 months ago
A lightweight, flow-based toolkit for parallel and distributed bioinformatics pipelines
Background: Bioinformatic analyses typically proceed as chains of data-processing tasks. A pipeline, or ‘workflow’, is a well-defined protocol, with a specific structure defin...
Marcin Cieslik, Cameron Mura
ESWS
2007
Springer
16 years 16 days ago
A Reasoning Framework for Rule-Based WSML
WSML is an ontology language specifically tailored to annotate Web Services, and part of its semantics adheres to the rule-based knowledge representation paradigm of logic program...
Stephan Grimm, Uwe Keller, Holger Lausen, Gá...
FMICS
2007
Springer
16 years 16 days ago
An Approach to Formalization and Analysis of Message Passing Libraries
Message passing using libraries implementing the Message Passing Interface (MPI) standard is the dominant communication mechanism in high performance computing (HPC) applications. ...
Robert Palmer, Michael Delisi, Ganesh Gopalakrishn...
WABI
2007
Springer
102views Bioinformatics» more  WABI 2007»
16 years 15 days ago
Homology Search with Fragmented Nucleic Acid Sequence Patterns
The comprehensive annotation of non-coding RNAs in newly sequenced genomes is still a largely unsolved problem because many functional RNAs exhibit not only poorly conserved sequen...
Axel Mosig, Julian J.-L. Chen, Peter F. Stadler
ISCA
2006
IEEE
125views Hardware» more  ISCA 2006»
16 years 12 days ago
Architectural Semantics for Practical Transactional Memory
Transactional Memory (TM) simplifies parallel programming by allowing for parallel execution of atomic tasks. Thus far, TM systems have focused on implementing transactional stat...
Austen McDonald, JaeWoong Chung, Brian D. Carlstro...