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    BMCBI
    2007
    156views more  BMCBI 2007»
    Large-scale clustering of CAGE tag expression data
    14 years 9 months ago
    Large-scale clustering of CAGE tag expression data
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    Background: Recent analyses have suggested that many genes possess multiple transcription start sites (TSSs) that are differentially utilized in different tissues and cell lines. ...
    Kazuro Shimokawa, Yuko Okamura-Oho, Takio Kurita, ...
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    BMCBI
    2007
    87views more  BMCBI 2007»
    'Unite and conquer': enhanced prediction of protein subcellular localization by integrating multiple specialized tools
    14 years 9 months ago
    'Unite and conquer': enhanced prediction of protein subcellular localization by integrating multiple specialized tools
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    Background: Knowing the subcellular location of proteins provides clues to their function as well as the interconnectivity of biological processes. Dozens of tools are available f...
    Yao Qing Shen, Gertraud Burger
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    BMCBI
    2008
    130views more  BMCBI 2008»
    A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm
    14 years 9 months ago
    A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm
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    Background: The process of horizontal gene transfer (HGT) is believed to be widespread in Bacteria and Archaea, but little comparative data is available addressing its occurrence ...
    Sheila Podell, Terry Gaasterland, Eric E. Allen
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    BMCBI
    2008
    173views more  BMCBI 2008»
    Improved machine learning method for analysis of gas phase chemistry of peptides
    14 years 9 months ago
    Improved machine learning method for analysis of gas phase chemistry of peptides
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    Background: Accurate peptide identification is important to high-throughput proteomics analyses that use mass spectrometry. Search programs compare fragmentation spectra (MS/MS) o...
    Allison Gehrke, Shaojun Sun, Lukasz A. Kurgan, Nat...
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    BMCBI
    2007
    133views more  BMCBI 2007»
    MATLIGN: a motif clustering, comparison and matching tool
    14 years 9 months ago
    MATLIGN: a motif clustering, comparison and matching tool
    Download  www.biomedcentral.com
    Background: Sequence motifs representing transcription factor binding sites (TFBS) are commonly encoded as position frequency matrices (PFM) or degenerate consensus sequences (CS)...
    Matti Kankainen, Ari Löytynoja
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