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BMCBI
2006
150views more  BMCBI 2006»
14 years 9 months ago
Protein structure similarity from principle component correlation analysis
Background: Owing to rapid expansion of protein structure databases in recent years, methods of structure comparison are becoming increasingly effective and important in revealing...
Xiaobo Zhou, James Chou, Stephen T. C. Wong
FOCS
2000
IEEE
15 years 2 months ago
Opportunistic Data Structures with Applications
There is an upsurging interest in designing succinct data structures for basic searching problems (see [23] and references therein). The motivation has to be found in the exponent...
Paolo Ferragina, Giovanni Manzini
BIBE
2003
IEEE
183views Bioinformatics» more  BIBE 2003»
15 years 3 months ago
Effective Indexing and Filtering for Similarity Search in Large Biosequence Databases
We present a multi-dimensional indexing approach for fast sequence similarity search in DNA and protein databases. In particular, we propose effective transformations of subsequen...
Ozgur Ozturk, Hakan Ferhatosmanoglu
BMCBI
2004
190views more  BMCBI 2004»
14 years 9 months ago
RAG: RNA-As-Graphs web resource
Background: The proliferation of structural and functional studies of RNA has revealed an increasing range of RNA's structural repertoire. Toward the objective of systematic ...
Daniela Fera, Namhee Kim, Nahum Shiffeldrim, Julie...
SOFSEM
2007
Springer
15 years 3 months ago
Multimedia Retrieval Algorithmics
Abstract. After text retrieval, the next waves in web searching and multimedia retrieval are the search for and delivery of images, music, video, and 3D scenes. Not only the percep...
Remco C. Veltkamp