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BMCBI
2010
137views more  BMCBI 2010»
15 years 1 months ago
Improving pairwise sequence alignment accuracy using near-optimal protein sequence alignments
Background: While the pairwise alignments produced by sequence similarity searches are a powerful tool for identifying homologous proteins - proteins that share a common ancestor ...
Michael L. Sierk, Michael E. Smoot, Ellen J. Bass,...
ALENEX
2009
191views Algorithms» more  ALENEX 2009»
15 years 2 months ago
Theory and Practise of Monotone Minimal Perfect Hashing
Minimal perfect hash functions have been shown to be useful to compress data in several data management tasks. In particular, order-preserving minimal perfect hash functions [10] ...
Djamal Belazzougui, Paolo Boldi, Rasmus Pagh, Seba...
WWW
2007
ACM
16 years 2 months ago
SPARQ2L: towards support for subgraph extraction queries in rdf databases
Many applications in analytical domains often have the need to "connect the dots" i.e., query about the structure of data. In bioinformatics for example, it is typical t...
Kemafor Anyanwu, Angela Maduko, Amit P. Sheth
NIPS
2007
15 years 3 months ago
Fixing Max-Product: Convergent Message Passing Algorithms for MAP LP-Relaxations
We present a novel message passing algorithm for approximating the MAP problem in graphical models. The algorithm is similar in structure to max-product but unlike max-product it ...
Amir Globerson, Tommi Jaakkola
SSDBM
2003
IEEE
83views Database» more  SSDBM 2003»
15 years 6 months ago
PiQA: An Algebra for Querying Protein Data Sets
Life science researchers frequently need to query large protein data sets in a variety of different ways. Protein data sets have a rich structure that includes its primary structu...
Sandeep Tata, Jignesh M. Patel