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NAR
2007
150views more  NAR 2007»
14 years 9 months ago
CellCircuits: a database of protein network models
CellCircuits (http://www.cellcircuits.org) is an openaccess database of molecular network models, designed to bridge the gap between databases of individual pairwise molecular int...
H. Craig Mak, Mike Daly, Bianca Gruebel, Trey Idek...
BMCBI
2004
150views more  BMCBI 2004»
14 years 9 months ago
SS-Wrapper: a package of wrapper applications for similarity searches on Linux clusters
Background: Large-scale sequence comparison is a powerful tool for biological inference in modern molecular biology. Comparing new sequences to those in annotated databases is a u...
Chunlin Wang, Elliot J. Lefkowitz
RECOMB
2005
Springer
15 years 10 months ago
Learning Interpretable SVMs for Biological Sequence Classification
Background: Support Vector Machines (SVMs) ? using a variety of string kernels ? have been successfully applied to biological sequence classification problems. While SVMs achieve ...
Christin Schäfer, Gunnar Rätsch, Sö...
BMCBI
2008
173views more  BMCBI 2008»
14 years 10 months ago
Gene Vector Analysis (Geneva): A unified method to detect differentially-regulated gene sets and similar microarray experiments
Background: Microarray experiments measure changes in the expression of thousands of genes. The resulting lists of genes with changes in expression are then searched for biologica...
Stephen W. Tanner, Pankaj Agarwal
DAWAK
2001
Springer
15 years 2 months ago
Adaptable Similarity Search Using Vector Quantization
Adaptable similarity queries based on quadratic form distance functions are widely popular in data mining applications, particularly for domains such as multimedia, CAD, molecular ...
Christian Böhm, Hans-Peter Kriegel, Thomas Se...