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» Fuzzy-UCS: preliminary results
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BMCBI
2007
115views more  BMCBI 2007»
14 years 12 months ago
Comparing sequences without using alignments: application to HIV/SIV subtyping
Background: In general, the construction of trees is based on sequence alignments. This procedure, however, leads to loss of informationwhen parts of sequence alignments (for inst...
Gilles Didier, Laurent Debomy, Maude Pupin, Ming Z...
BMCBI
2010
125views more  BMCBI 2010»
14 years 12 months ago
Compartmentalization of the Edinburgh Human Metabolic Network
Background: Direct in vivo investigation of human metabolism is complicated by the distinct metabolic functions of various sub-cellular organelles. Diverse micro-environments in d...
Tong Hao, Hongwu Ma, Xue-Ming Zhao, Igor Goryanin
BMCBI
2007
128views more  BMCBI 2007»
14 years 12 months ago
Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assess
Background: Similarity of sequences is a key mathematical notion for Classification and Phylogenetic studies in Biology. It is currently primarily handled using alignments. Howeve...
Paolo Ferragina, Raffaele Giancarlo, Valentina Gre...
BMCBI
2008
78views more  BMCBI 2008»
14 years 12 months ago
Genome Environment Browser (GEB): a dynamic browser for visualising high-throughput experimental data in the context of genome f
Background: There is accumulating evidence that the milieu of repeat elements and other nongenic sequence features at a given chromosomal locus, here defined as the genome environ...
Derek Huntley, Y. Amy Tang, Tatyana B. Nesterova, ...
COMPSEC
2010
146views more  COMPSEC 2010»
14 years 12 months ago
An intruder model with message inspection for model checking security protocols
Model checking security protocols is based on an intruder model that represents the eavesdropping or interception of the exchanged messages, while at the same time performs attack...
Stylianos Basagiannis, Panagiotis Katsaros, Andrew...