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WEA
2005
Springer
176views Algorithms» more  WEA 2005»
15 years 2 months ago
High-Performance Algorithm Engineering for Large-Scale Graph Problems and Computational Biology
Abstract. Many large-scale optimization problems rely on graph theoretic solutions; yet high-performance computing has traditionally focused on regular applications with high degre...
David A. Bader
89
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BMCBI
2010
198views more  BMCBI 2010»
14 years 9 months ago
ClustalXeed: a GUI-based grid computation version for high performance and terabyte size multiple sequence alignment
Background: There is an increasing demand to assemble and align large-scale biological sequence data sets. The commonly used multiple sequence alignment programs are still limited...
Taeho Kim, Hyun Joo
BMCBI
2010
175views more  BMCBI 2010»
14 years 9 months ago
Towards high performance computing for molecular structure prediction using IBM Cell Broadband Engine - an implementation perspe
Background: RNA structure prediction problem is a computationally complex task, especially with pseudo-knots. The problem is well-studied in existing literature and predominantly ...
S. P. T. Krishnan, Sim Sze Liang, Bharadwaj Veerav...
CCGRID
2010
IEEE
14 years 10 months ago
Designing Accelerator-Based Distributed Systems for High Performance
Abstract--Multi-core processors with accelerators are becoming commodity components for high-performance computing at scale. While accelerator-based processors have been studied in...
M. Mustafa Rafique, Ali Raza Butt, Dimitrios S. Ni...