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WEA
2005
Springer
176views Algorithms» more  WEA 2005»
15 years 5 months ago
High-Performance Algorithm Engineering for Large-Scale Graph Problems and Computational Biology
Abstract. Many large-scale optimization problems rely on graph theoretic solutions; yet high-performance computing has traditionally focused on regular applications with high degre...
David A. Bader
BMCBI
2010
198views more  BMCBI 2010»
14 years 12 months ago
ClustalXeed: a GUI-based grid computation version for high performance and terabyte size multiple sequence alignment
Background: There is an increasing demand to assemble and align large-scale biological sequence data sets. The commonly used multiple sequence alignment programs are still limited...
Taeho Kim, Hyun Joo
BMCBI
2010
175views more  BMCBI 2010»
14 years 12 months ago
Towards high performance computing for molecular structure prediction using IBM Cell Broadband Engine - an implementation perspe
Background: RNA structure prediction problem is a computationally complex task, especially with pseudo-knots. The problem is well-studied in existing literature and predominantly ...
S. P. T. Krishnan, Sim Sze Liang, Bharadwaj Veerav...
CCGRID
2010
IEEE
15 years 25 days ago
Designing Accelerator-Based Distributed Systems for High Performance
Abstract--Multi-core processors with accelerators are becoming commodity components for high-performance computing at scale. While accelerator-based processors have been studied in...
M. Mustafa Rafique, Ali Raza Butt, Dimitrios S. Ni...