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IPPS
2006
IEEE
15 years 3 months ago
Bio-sequence database scanning on a GPU
Protein sequences with unknown functionality are often compared to a set of known sequences to detect functional similarities. Efficient dynamic programming algorithms exist for t...
Weiguo Liu, Bertil Schmidt, Gerrit Voss, Adrian Sc...
CLUSTER
2006
IEEE
15 years 1 months ago
HPC Cluster Readiness of Xen and User Mode Linux
This paper examines the suitability of different virtualization techniques in a high performance cluster environment. A survey of virtualization techniques is presented. Two repre...
Wesley Emeneker, Dan Stanzione
SIGARCH
2010
91views more  SIGARCH 2010»
14 years 4 months ago
Programming framework for clusters with heterogeneous accelerators
We describe a programming framework for high performance clusters with various hardware accelerators. In this framework, users can utilize the available heterogeneous resources pr...
Kuen Hung Tsoi, Anson H. T. Tse, Peter Pietzuch, W...
PPOPP
2011
ACM
14 years 9 days ago
GRace: a low-overhead mechanism for detecting data races in GPU programs
In recent years, GPUs have emerged as an extremely cost-effective means for achieving high performance. Many application developers, including those with no prior parallel program...
Mai Zheng, Vignesh T. Ravi, Feng Qin, Gagan Agrawa...
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BMCBI
2008
211views more  BMCBI 2008»
14 years 9 months ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle