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» Gene Expression Data Management: A Case Study
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BMCBI
2005
132views more  BMCBI 2005»
14 years 9 months ago
Correlation and prediction of gene expression level from amino acid and dipeptide composition of its protein
Background: A large number of papers have been published on analysis of microarray data with particular emphasis on normalization of data, detection of differentially expressed ge...
Gajendra P. S. Raghava, Joon H. Han
CLOUDCOM
2009
Springer
15 years 1 months ago
Biomedical Case Studies in Data Intensive Computing
Many areas of science are seeing a data deluge coming from new instruments, myriads of sensors and exponential growth in electronic records. We take two examples
Geoffrey Fox, Xiaohong Qiu, Scott Beason, Jong Y. ...
85
Voted
ICASSP
2008
IEEE
15 years 4 months ago
Probabilistic framework for gene expression clustering validation based on gene ontology and graph theory
Based on the correlation between expression and ontologydriven gene similarity, we incorporate functional annotations into gene expression clustering validation. A probabilistic f...
Yinyin Yuan, Chang-Tsun Li
64
Voted
BMCBI
2007
104views more  BMCBI 2007»
14 years 9 months ago
A comparison of Affymetrix gene expression arrays
Background: Affymetrix GeneChips™ are an important tool in many facets of biological research. Recently, notable design changes to the chips have been made. In this study, we us...
Mark D. Robinson, Terence P. Speed
BMCBI
2010
118views more  BMCBI 2010»
14 years 9 months ago
Testing for mean and correlation changes in microarray experiments: an application for pathway analysis
Background: Microarray experiments examine the change in transcript levels of tens of thousands of genes simultaneously. To derive meaningful data, biologists investigate the resp...
Mayer Alvo, Zhongzhu Liu, Andrew Williams, Carole ...