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» Gene Expression Data Management: A Case Study
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NAR
2002
141views more  NAR 2002»
14 years 9 months ago
Co-expression pattern from DNA microarray experiments as a tool for operon prediction
The prediction of operons, the smallest unit of transcription in prokaryotes, is the first step towards reconstruction of a regulatory network at the whole genome level. Sequence ...
Chiara Sabatti, Lars Rohlin, Min-Kyu Oh, James C. ...
CIDR
2009
181views Algorithms» more  CIDR 2009»
14 years 11 months ago
The Case for RodentStore: An Adaptive, Declarative Storage System
Recent excitement in the database community surrounding new applications--analytic, scientific, graph, geospatial, etc.--has led to an explosion in research on database storage sy...
Philippe Cudré-Mauroux, Eugene Wu, Samuel M...
BMCBI
2007
117views more  BMCBI 2007»
14 years 10 months ago
Application of a correlation correction factor in a microarray cross-platform reproducibility study
Background: Recent research examining cross-platform correlation of gene expression intensities has yielded mixed results. In this study, we demonstrate use of a correction factor...
Kellie J. Archer, Catherine I. Dumur, G. Scott Tay...
JIB
2006
110views more  JIB 2006»
14 years 9 months ago
Combining biomedical knowledge and transcriptomic data to extract new knowledge on genes
In biomedical research, interpretation of microarray data requires confrontation of data and knowledge from heterogeneous resources, either in the biomedical domain or in genomics...
Emilie Guérin, Gwenaëlle Marquet, Juli...
DLOG
2006
14 years 11 months ago
Data Complexity of Answering Unions of Conjunctive Queries in SHIQ
The novel context of accessing and querying large data repositories through ontologies that are formalized in terms of expressive DLs requires on the one hand to consider query an...
Magdalena Ortiz, Diego Calvanese, Thomas Eiter