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BMCBI
2007
120views more  BMCBI 2007»
15 years 2 months ago
Recognition of interferon-inducible sites, promoters, and enhancers
Background: Computational analysis of gene regulatory regions is important for prediction of functions of many uncharacterized genes. With this in mind, search of the target genes...
Elena A. Ananko, Yury V. Kondrakhin, Tatyana I. Me...
BMCBI
2006
171views more  BMCBI 2006»
15 years 2 months ago
The effect of oligonucleotide microarray data pre-processing on the analysis of patient-cohort studies
Background: Intensity values measured by Affymetrix microarrays have to be both normalized, to be able to compare different microarrays by removing non-biological variation, and s...
Roel G. W. Verhaak, Frank J. T. Staal, Peter J. M....
GCB
2008
Springer
103views Biometrics» more  GCB 2008»
15 years 3 months ago
Utilizing Promoter Pair Orientations for HMM-based Analysis of ChIP-chip Data
: Array-based analysis of chromatin immunoprecipitation data (ChIP-chip) is a powerful technique for identifying DNA target regions of individual transcription factors. Here, we pr...
Michael Seifert, Jens Keilwagen, Marc Strickert, I...
FORMATS
2007
Springer
15 years 8 months ago
On Timed Models of Gene Networks
Abstract. We present a systematic translation from timed models of genetic regulatory networks into products of timed automata to which one can apply verification tools in order l...
Grégory Batt, Ramzi Ben Salah, Oded Maler
DSN
2006
IEEE
15 years 8 months ago
BlueGene/L Failure Analysis and Prediction Models
The growing computational and storage needs of several scientific applications mandate the deployment of extreme-scale parallel machines, such as IBM’s BlueGene/L which can acc...
Yinglung Liang, Yanyong Zhang, Anand Sivasubramani...