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» Gene finding in the chicken genome
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BMCBI
2007
102views more  BMCBI 2007»
14 years 9 months ago
Identification of homologs in insignificant blast hits by exploiting extrinsic gene properties
Background: Homology is a key concept in both evolutionary biology and genomics. Detection of homology is crucial in fields like the functional annotation of protein sequences and...
Jos Boekhorst, Berend Snel
73
Voted
TREC
2003
14 years 11 months ago
Methods for Accurate Retrieval of MEDLINE Citations in Functional Genomics
The lack of discipline and consistency in gene naming poses a formidable challenge to researchers in locating relevant information sources in the genomics literature. The research...
Mehmet Kayaalp, Alan R. Aronson, Susanne M. Humphr...
CSB
2005
IEEE
109views Bioinformatics» more  CSB 2005»
15 years 3 months ago
Patterns of Gene Deletion following Genome Duplication in Yeast
Whole genome duplication (WGD) is followed by massive duplicate deletion that reorganizes gene adjacencies. We compare the deletion patterns and adjacency reorganization following...
Jake K. Byrnes, Wen-Hsiung Li
SDM
2010
SIAM
192views Data Mining» more  SDM 2010»
14 years 11 months ago
Fast and Accurate Gene Prediction by Decision Tree Classification
Gene prediction is one of the most challenging tasks in genome analysis, for which many tools have been developed and are still evolving. In this paper, we present a novel gene pr...
Rong She, Jeffrey Shih-Chieh Chu, Ke Wang, Nanshen...
71
Voted
RECOMB
2008
Springer
15 years 9 months ago
Estimating the Relative Contributions of New Genes from Retrotransposition and Segmental Duplication Events during Mammalian Evo
Gene duplication has long been recognized as a major force in genome evolution and has recently been recognized as an important source of individual variation. For many years the o...
Jin Jun, Paul Ryvkin, Edward Hemphill, Ion I. Mand...