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» Gene function prediction using labeled and unlabeled data
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NAR
2002
132views more  NAR 2002»
14 years 10 months ago
euGenes: a eukaryote genome information system
euGenes is a genome information system and database that provides a common summary of eukaryote genes and genomes, at web site http://iubio.bio.indiana.edu/eugenes/. Seven popular...
Donald G. Gilbert
88
Voted
BMCBI
2006
124views more  BMCBI 2006»
14 years 10 months ago
Predicting transcription factor binding sites using local over-representation and comparative genomics
Background: Identifying cis-regulatory elements is crucial to understanding gene expression, which highlights the importance of the computational detection of overrepresented tran...
Matthieu Defrance, Hélène Touzet
KDD
2008
ACM
207views Data Mining» more  KDD 2008»
15 years 10 months ago
Active learning with direct query construction
Active learning may hold the key for solving the data scarcity problem in supervised learning, i.e., the lack of labeled data. Indeed, labeling data is a costly process, yet an ac...
Charles X. Ling, Jun Du
SDM
2010
SIAM
259views Data Mining» more  SDM 2010»
14 years 11 months ago
Semi-supervised Bio-named Entity Recognition with Word-Codebook Learning
We describe a novel semi-supervised method called WordCodebook Learning (WCL), and apply it to the task of bionamed entity recognition (bioNER). Typical bioNER systems can be seen...
Pavel P. Kuksa, Yanjun Qi
BMCBI
2006
123views more  BMCBI 2006»
14 years 10 months ago
Characterizing disease states from topological properties of transcriptional regulatory networks
Background: High throughput gene expression experiments yield large amounts of data that can augment our understanding of disease processes, in addition to classifying samples. He...
David Tuck, Harriet Kluger, Yuval Kluger