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» Gene function prediction using labeled and unlabeled data
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84
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BMCBI
2005
104views more  BMCBI 2005»
14 years 10 months ago
Scoring functions for transcription factor binding site prediction
Background: Transcription factor binding site (TFBS) prediction is a difficult problem, which requires a good scoring function to discriminate between real binding sites and backg...
Markus T. Friberg, Peter von Rohr, Gaston H. Gonne...
BIBM
2008
IEEE
108views Bioinformatics» more  BIBM 2008»
15 years 4 months ago
Systematic Evaluation of Scaling Methods for Gene Expression Data
Even after an experimentally prepared gene expression data set has been pre-processed to account for variations in the microarray technology, there may be inconsistencies between ...
Gaurav Pandey, Lakshmi Naarayanan Ramakrishnan, Mi...
77
Voted
ICML
2006
IEEE
15 years 11 months ago
Learning a kernel function for classification with small training samples
When given a small sample, we show that classification with SVM can be considerably enhanced by using a kernel function learned from the training data prior to discrimination. Thi...
Tomer Hertz, Aharon Bar-Hillel, Daphna Weinshall
107
Voted
BMCBI
2008
173views more  BMCBI 2008»
14 years 10 months ago
Gene Vector Analysis (Geneva): A unified method to detect differentially-regulated gene sets and similar microarray experiments
Background: Microarray experiments measure changes in the expression of thousands of genes. The resulting lists of genes with changes in expression are then searched for biologica...
Stephen W. Tanner, Pankaj Agarwal
112
Voted
BMCBI
2006
158views more  BMCBI 2006»
14 years 10 months ago
Parallelization of multicategory support vector machines (PMC-SVM) for classifying microarray data
Background: Multicategory Support Vector Machines (MC-SVM) are powerful classification systems with excellent performance in a variety of data classification problems. Since the p...
Chaoyang Zhang, Peng Li, Arun Rajendran, Youping D...