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» Gene functional classification from heterogeneous data
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BMCBI
2008
108views more  BMCBI 2008»
14 years 10 months ago
An analysis of the positional distribution of DNA motifs in promoter regions and its biological relevance
Background: Motif finding algorithms have developed in their ability to use computationally efficient methods to detect patterns in biological sequences. However the posterior cla...
Ana C. Casimiro, Susana Vinga, Ana T. Freitas, Arl...
BIOINFORMATICS
2006
135views more  BIOINFORMATICS 2006»
14 years 10 months ago
Effective similarity measures for expression profiles
It is commonly accepted that genes with similar expression profiles are functionally related. However, there are many ways one can measure the similarity of expression profiles, a...
Golan Yona, William Dirks, Shafquat Rahman, David ...
VLDB
2007
ACM
104views Database» more  VLDB 2007»
15 years 10 months ago
Inverse Functions in the AquaLogic Data Services Platform
When integrating data from heterogeneous sources, it is often necessary to transform both the schemas and the data from the underlying sources in order to present the integrated d...
Nicola Onose, Vinayak R. Borkar, Michael J. Carey
PKDD
2001
Springer
108views Data Mining» more  PKDD 2001»
15 years 2 months ago
Knowledge Discovery in Multi-label Phenotype Data
The biological sciences are undergoing an explosion in the amount of available data. New data analysis methods are needed to deal with the data. We present work using KDD to analys...
Amanda Clare, Ross D. King
BMCBI
2007
102views more  BMCBI 2007»
14 years 10 months ago
Identification of homologs in insignificant blast hits by exploiting extrinsic gene properties
Background: Homology is a key concept in both evolutionary biology and genomics. Detection of homology is crucial in fields like the functional annotation of protein sequences and...
Jos Boekhorst, Berend Snel