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» Gene set analysis using principal components
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112
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EVOW
2005
Springer
15 years 6 months ago
Order Preserving Clustering over Multiple Time Course Experiments
Abstract. Clustering still represents the most commonly used technique to analyze gene expression data—be it classical clustering approaches that aim at finding biologically rel...
Stefan Bleuler, Eckart Zitzler
94
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RSFDGRC
2005
Springer
192views Data Mining» more  RSFDGRC 2005»
15 years 6 months ago
An Open Source Microarray Data Analysis System with GUI: Quintet
We address Quintet, an R-based unified cDNA microarray data analysis system with GUI. Five principal categories of microarray data analysis have been coherently integrated in Quin...
Jun-kyoung Choe, Tae-Hoon Chung, Sunyong Park, Hwa...
112
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BMCBI
2005
246views more  BMCBI 2005»
15 years 16 days ago
ParPEST: a pipeline for EST data analysis based on parallel computing
Background: Expressed Sequence Tags (ESTs) are short and error-prone DNA sequences generated from the 5' and 3' ends of randomly selected cDNA clones. They provide an im...
Nunzio D'Agostino, Mario Aversano, Maria Luisa Chi...
JBI
2004
171views Bioinformatics» more  JBI 2004»
15 years 2 months ago
Consensus Clustering and Functional Interpretation of Gene Expression Data
Microarray analysis using clustering algorithms can suffer from lack of inter-method consistency in assigning related gene-expression profiles to clusters. Obtaining a consensus s...
Paul Kellam, Stephen Swift, Allan Tucker, Veronica...
ICA
2004
Springer
15 years 6 months ago
Using Kernel PCA for Initialisation of Variational Bayesian Nonlinear Blind Source Separation Method
The variational Bayesian nonlinear blind source separation method introduced by Lappalainen and Honkela in 2000 is initialised with linear principal component analysis (PCA). Becau...
Antti Honkela, Stefan Harmeling, Leo Lundqvist, Ha...