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BMCBI
2010
100views more  BMCBI 2010»
14 years 10 months ago
Gene set enrichment meta-learning analysis: next- generation sequencing versus microarrays
Background: Reproducibility of results can have a significant impact on the acceptance of new technologies in gene
Gregor Stiglic, Mateja Bajgot, Peter Kokol
BMCBI
2007
112views more  BMCBI 2007»
14 years 10 months ago
Inferring biological functions and associated transcriptional regulators using gene set expression coherence analysis
Background: Gene clustering has been widely used to group genes with similar expression pattern in microarray data analysis. Subsequent enrichment analysis using predefined gene s...
Tae-Min Kim, Yeun-Jun Chung, Mun-Gan Rhyu, Myeong ...
NAR
2007
155views more  NAR 2007»
14 years 10 months ago
AthaMap web tools for the analysis and identification of co-regulated genes
The AthaMap database generates a map of cisregulatory elements for the whole Arabidopsis thaliana genome. This database has been extended by new tools to identify common cis-regul...
Claudia Galuschka, Martin Schindler, Lorenz Bü...
BMCBI
2007
186views more  BMCBI 2007»
14 years 10 months ago
GeneBins: a database for classifying gene expression data, with application to plant genome arrays
Background: To interpret microarray experiments, several ontological analysis tools have been developed. However, current tools are limited to specific organisms. Results: We deve...
Nicolas Goffard, Georg Weiller
BMCBI
2008
128views more  BMCBI 2008»
14 years 10 months ago
Meta-analysis of breast cancer microarray studies in conjunction with conserved cis-elements suggest patterns for coordinate reg
Background: Gene expression measurements from breast cancer (BrCa) tumors are established clinical predictive tools to identify tumor subtypes, identify patients showing poor/good...
David D. Smith, Pål Sætrom, Ola R. Sn&...