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» Gene-set approach for expression pattern analysis
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KBSE
2009
IEEE
15 years 4 months ago
Generating Vulnerability Signatures for String Manipulating Programs Using Automata-Based Forward and Backward Symbolic Analyses
Given a program and an attack pattern (specified as a regular expression), we automatically generate string-based vulnerability signatures, i.e., a characterization that includes...
Fang Yu, Muath Alkhalaf, Tevfik Bultan
BMCBI
2008
105views more  BMCBI 2008»
14 years 9 months ago
SIGMA2: A system for the integrative genomic multi-dimensional analysis of cancer genomes, epigenomes, and transcriptomes
Background: High throughput microarray technologies have afforded the investigation of genomes, epigenomes, and transcriptomes at unprecedented resolution. However, software packa...
Raj Chari, Bradley P. Coe, Craig Wedseltoft, Marie...
KDD
2003
ACM
133views Data Mining» more  KDD 2003»
15 years 10 months ago
Interactive Analysis of Gene Interactions Using Graphical gaussian model
DNA microarray provides a powerful basis for analysis of gene expression. Data mining methods such as clustering have been widely applied to microarray data to link genes that sho...
Xintao Wu, Yong Ye, Kalpathi R. Subramanian
90
Voted
JCDL
2009
ACM
162views Education» more  JCDL 2009»
15 years 4 months ago
Supporting analysis of future-related information in news archives and the web
A lot of future-related information is available in news articles or Web pages. This information can however differ to large extent and may fluctuate over time. It is therefore di...
Adam Jatowt, Kensuke Kanazawa, Satoshi Oyama, Kats...
ISMB
2000
14 years 11 months ago
Pattern Recognition of Genomic Features with Microarrays: Site Typing of Mycobacterium Tuberculosis Strains
Mycobacterium tuberculosis (M. tb.) strains differ in the number and locations of a transposon-like insertion sequence known as IS6110. Accurate detection of this sequence can be ...
Soumya Raychaudhuri, Joshua M. Stuart, Xuemin Liu,...