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BIOINFORMATICS
1998
56views more  BIOINFORMATICS 1998»
14 years 10 months ago
GeneTree: comparing gene and species phylogenies using reconciled trees
Roderic D. M. Page
BMCBI
2010
108views more  BMCBI 2010»
14 years 10 months ago
iGTP: A software package for large-scale gene tree parsimony analysis
Background: The ever-increasing wealth of genomic sequence information provides an unprecedented opportunity for large-scale phylogenetic analysis. However, species phylogeny infe...
Ruchi Chaudhary, Mukul S. Bansal, André Weh...
124
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RECOMB
2006
Springer
15 years 11 months ago
Identifiability Issues in Phylogeny-Based Detection of Horizontal Gene Transfer
Prokaryotic organisms share genetic material across species boundaries by means of a process known as horizontal gene transfer (HGT). Detecting this process bears great significanc...
Cuong Than, Derek A. Ruths, Hideki Innan, Luay Nak...
100
Voted
RECOMB
2008
Springer
15 years 11 months ago
Locating Multiple Gene Duplications through Reconciled Trees
We introduce the first exact and efficient algorithm for Guig?o et al.'s problem that, given a collection of rooted, binary gene trees and a rooted, binary species tree, deter...
J. Gordon Burleigh, Mukul S. Bansal, André ...
115
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JCB
2007
145views more  JCB 2007»
14 years 10 months ago
Confounding Factors in HGT Detection: Statistical Error, Coalescent Effects, and Multiple Solutions
Prokaryotic organisms share genetic material across species boundaries by means of a process known as horizontal gene transfer (HGT). This process has great significance for unde...
Cuong Than, Derek A. Ruths, Hideki Innan, Luay Nak...