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VLSISP
2010
119views more  VLSISP 2010»
14 years 8 months ago
Hardware Acceleration of HMMER on FPGAs
We propose a new parallelization scheme for the hmmsearch function of the HMMER software, in order to target FPGA technology. hmmsearch is a very compute intensive software for bio...
Steven Derrien, Patrice Quinton
BMCBI
2005
87views more  BMCBI 2005»
15 years 1 months ago
Efficient decoding algorithms for generalized hidden Markov model gene finders
Background: The Generalized Hidden Markov Model (GHMM) has proven a useful framework for the task of computational gene prediction in eukaryotic genomes, due to its flexibility an...
William H. Majoros, Mihaela Pertea, Arthur L. Delc...
DAC
2005
ACM
16 years 2 months ago
Fault and energy-aware communication mapping with guaranteed latency for applications implemented on NoC
As feature sizes shrink, transient failures of on-chip network links become a critical problem. At the same time, many applications require guarantees on both message arrival prob...
Sorin Manolache, Petru Eles, Zebo Peng
SASP
2009
IEEE
291views Hardware» more  SASP 2009»
15 years 8 months ago
A parameterisable and scalable Smith-Waterman algorithm implementation on CUDA-compatible GPUs
—This paper describes a multi-threaded parallel design and implementation of the Smith-Waterman (SM) algorithm on compute unified device architecture (CUDA)-compatible graphic pr...
Cheng Ling, Khaled Benkrid, Tsuyoshi Hamada
DATE
2003
IEEE
87views Hardware» more  DATE 2003»
15 years 7 months ago
FPGA-Based Implementation of a Serial RSA Processor
In this paper we present an hardware implementation of the RSA algorithm for public-key cryptography. The RSA algorithm consists in the computation of modular exponentials on larg...
Antonino Mazzeo, Luigi Romano, Giacinto Paolo Sagg...