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» General Purpose Agent-Based Parallel Computing
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EDOC
2003
IEEE
15 years 2 months ago
Conversation-oriented Protocols for Contract Negotiations
The expression of contracts in computer readable form, and the development of automated tests for completeness and well-formedness of contracts, has opened the door to significant...
James E. Hanson, Zoran Milosevic
FPGA
2004
ACM
174views FPGA» more  FPGA 2004»
15 years 3 months ago
A compiled accelerator for biological cell signaling simulations
The simulation of large systems of biochemical reactions is a key part of research into molecular signaling and information processing in biological cells. However, it can be impr...
John F. Keane, Christopher Bradley, Carl Ebeling
77
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PLDI
2010
ACM
15 years 2 months ago
A GPGPU compiler for memory optimization and parallelism management
This paper presents a novel optimizing compiler for general purpose computation on graphics processing units (GPGPU). It addresses two major challenges of developing high performa...
Yi Yang, Ping Xiang, Jingfei Kong, Huiyang Zhou
73
Voted
IPPS
2008
IEEE
15 years 4 months ago
Massive supercomputing coping with heterogeneity of modern accelerators
Heterogeneous supercomputers with combined general purpose and accelerated CPUs promise to be the future major architecture due to their wideranging generality and superior perfor...
Toshio Endo, Satoshi Matsuoka
98
Voted
HPDC
2010
IEEE
14 years 10 months ago
MPIPairwiseStatSig: parallel pairwise statistical significance estimation of local sequence alignment
Sequence comparison is considered as a cornerstone application in bioinformatics, which forms the basis of many other applications. In particular, pairwise sequence alignment is a...
Ankit Agrawal, Sanchit Misra, Daniel Honbo, Alok N...