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BMCBI
2010
86views more  BMCBI 2010»
15 years 4 months ago
Reaction graph kernels predict EC numbers of unknown enzymatic reactions in plant secondary metabolism
Background: Understanding of secondary metabolic pathway in plant is essential for finding druggable candidate enzymes. However, there are many enzymes whose functions are not yet...
Hiroto Saigo, Masahiro Hattori, Hisashi Kashima, K...
BMCBI
2007
109views more  BMCBI 2007»
15 years 4 months ago
A domain-based approach to predict protein-protein interactions
Background: Knowing which proteins exist in a certain organism or cell type and how these proteins interact with each other are necessary for the understanding of biological proce...
Mudita Singhal, Haluk Resat
BMCBI
2007
95views more  BMCBI 2007»
15 years 4 months ago
Phylogenetic tree information aids supervised learning for predicting protein-protein interaction based on distance matrices
Background: Protein-protein interactions are critical for cellular functions. Recently developed computational approaches for predicting protein-protein interactions utilize co-ev...
Roger A. Craig, Li Liao
BMCBI
2008
101views more  BMCBI 2008»
15 years 4 months ago
Reranking candidate gene models with cross-species comparison for improved gene prediction
Background: Most gene finders score candidate gene models with state-based methods, typically HMMs, by combining local properties (coding potential, splice donor and acceptor patt...
Qian Liu, Koby Crammer, Fernando C. N. Pereira, Da...
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JSW
2008
202views more  JSW 2008»
15 years 4 months ago
Change Prediction in Object-Oriented Software Systems: A Probabilistic Approach
An estimation of change-proneness of parts of a software system is an active topic in the area of software engineering. Such estimates can be used to predict changes to different c...
Ali R. Sharafat, Ladan Tahvildari