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» Generalization Methods in Bioinformatics
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78
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IPPS
2006
IEEE
15 years 3 months ago
An experimental study of optimizing bioinformatics applications
As bioinformatics is an emerging application of high performance computing, this paper first evaluates the memory performance of several representative bioinformatics application...
Guangming Tan, Lin Xu, Shengzhong Feng, Ninghui Su...
SIGMOD
2004
ACM
121views Database» more  SIGMOD 2004»
15 years 9 months ago
An Optimal Algorithm for Querying Tree Structures and its Applications in Bioinformatics
Trees and graphs are widely used to model biological databases. Providing efficient algorithms to support tree-based or graph-based querying is therefore an important issue. In th...
Hsiao-Fei Liu, Ya-Hui Chang, Kun-Mao Chao
BMCBI
2006
116views more  BMCBI 2006»
14 years 9 months ago
HotSwap for bioinformatics: A STRAP tutorial
Background: Bioinformatics applications are now routinely used to analyze large amounts of data. Application development often requires many cycles of optimization, compiling, and...
Christoph Gille, Peter N. Robinson
98
Voted
GCB
2009
Springer
481views Biometrics» more  GCB 2009»
15 years 4 months ago
CUDA-based Multi-core Implementation of MDS-based Bioinformatics Algorithms
: Solving problems in bioinformatics often needs extensive computational power. Current trends in processor architecture, especially massive multi-core processors for graphic cards...
Thilo Fester, Falk Schreiber, Marc Strickert
KDD
2006
ACM
222views Data Mining» more  KDD 2006»
15 years 10 months ago
A component-based framework for knowledge discovery in bioinformatics
Motivation: In the field of bioinformatics there is an emerging need to integrate all knowledge discovery steps into a standardized modular framework. Indeed, component-based deve...
Julien Etienne, Bernd Wachmann, Lei Zhang