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BIBM
2008
IEEE
141views Bioinformatics» more  BIBM 2008»
15 years 10 months ago
Protein-Protein Interaction Network Alignment by Quantitative Simulation
We adapt a network simulation algorithm called quantitative simulation (QSim) for use in the alignment of biological networks. Unlike most network alignment methods, QSim finds l...
Perry Evans, Ted Sandler, Lyle H. Ungar
BIBM
2008
IEEE
110views Bioinformatics» more  BIBM 2008»
15 years 10 months ago
Genome Alignments Using MPI-LAGAN
We develop a parallel algorithm for a widely used whole genome alignment method called LAGAN. We use the MPI-based protocol to develop parallel solutions for two phases of the alg...
Ruinan Zhang, Huzefa Rangwala, George Karypis
BIBE
2007
IEEE
108views Bioinformatics» more  BIBE 2007»
15 years 10 months ago
On the Design of Oligos for Gene Synthesis
— Methods for reliable synthesis of long genes offer great promise for protein synthesis via expression of synthetic genes, with applications to improved analysis of protein stru...
Chris Thachuk, Anne Condon
BIBE
2007
IEEE
124views Bioinformatics» more  BIBE 2007»
15 years 10 months ago
Finding Cancer-Related Gene Combinations Using a Molecular Evolutionary Algorithm
—High-throughput data such as microarrays make it possible to investigate the molecular-level mechanism of cancer more efficiently. Computational methods boost the microarray ana...
Chan-Hoon Park, Soo-Jin Kim, Sun Kim, Dong-Yeon Ch...
ISBRA
2007
Springer
15 years 10 months ago
A Bootstrap Correspondence Analysis for Factorial Microarray Experiments with Replications
Characterized by simultaneous measurement of the effects of experimental factors and their interactions, the economic and efficient factorial design is well accepted in microarray ...
Qihua Tan, Jesper Dahlgaard, Basem M. Abdallah, We...