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BIBM
2009
IEEE
206views Bioinformatics» more  BIBM 2009»
15 years 11 months ago
Application of Kernel Functions for Accurate Similarity Search in Large Chemical Databases
Background: Similaritysearch in chemical structure databases is an important problem with many applications in chemical genomics, drug design, and efficient chemical probe screeni...
Xiaohong Wang, Jun Huan, Aaron M. Smalter, Gerald ...
142
Voted
BIBE
2007
IEEE
127views Bioinformatics» more  BIBE 2007»
15 years 11 months ago
A Heuristic for Phylogenetic Reconstruction Using Transposition
Abstract—Because of the advent of high-throughput sequencing and the consequent reduction in cost of sequencing, many organisms have been completely sequenced and most of their g...
Feng Yue, Meng Zhang, Jijun Tang
156
Voted
BIOINFORMATICS
2011
14 years 8 months ago
RINQ: Reference-based Indexing for Network Queries
We consider the problem of similarity queries in biological network databases. Given a database of networks, similarity query returns all the database networks whose similarity (i...
Günhan Gülsoy, Tamer Kahveci
131
Voted
COMBINATORICS
1998
76views more  COMBINATORICS 1998»
15 years 4 months ago
An Exploration of the Permanent-Determinant Method
The permanent-determinant method and its generalization, the HafnianPfaffian method, are methods to enumerate perfect matchings of plane graphs that were discovered by P. W. Kaste...
Greg Kuperberg
WCE
2007
15 years 5 months ago
A Multidimensional Bisection Method for Minimizing Function over Simplex
—A new method for minimization problem over simplex, as a generalization of a well-known in onedimensional optimization bisection method is proposed. The convergence of the metho...
A. N. Baushev, E. Y. Morozova