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GCB
2009
Springer
180views Biometrics» more  GCB 2009»
16 years 1 months ago
2D Projections of RNA Folding Landscapes
Abstract: The analysis of RNA folding landscapes yields insights into the kinetic folding behavior not available from classical structure prediction methods. This is especially imp...
Ronny Lorenz, Christoph Flamm, Ivo L. Hofacker
WABI
2007
Springer
110views Bioinformatics» more  WABI 2007»
16 years 17 days ago
Haplotype Inference Via Hierarchical Genotype Parsing
The within-species genetic variation due to recombinations leads to a mosaic-like structure of DNA. This structure can be modeled, e.g. by parsing sample sequences of current DNA w...
Pasi Rastas, Esko Ukkonen
FCCM
2006
IEEE
137views VLSI» more  FCCM 2006»
16 years 16 days ago
Single Pass, BLAST-Like, Approximate String Matching on FPGAs
Abstract: Approximate string matching is fundamental to bioinformatics, and has been the subject of numerous FPGA acceleration studies. We address issues with respect to FPGA imple...
Martin C. Herbordt, Josh Model, Yongfeng Gu, Bhara...
SEMWEB
2005
Springer
15 years 12 months ago
Provenance-Based Validation of E-Science Experiments
E-science experiments typically involve many distributed services maintained by different organisations. After an experiment has been executed, it is useful for a scientist to ver...
Sylvia C. Wong, Simon Miles, Weijian Fang, Paul T....
WABI
2005
Springer
118views Bioinformatics» more  WABI 2005»
15 years 12 months ago
A Hidden Markov Technique for Haplotype Reconstruction
We give a new algorithm for the genotype phasing problem. Our solution is based on a hidden Markov model for haplotypes. The model has a uniform structure, unlike most solutions pr...
Pasi Rastas, Mikko Koivisto, Heikki Mannila, Esko ...